Aim of the project is to create the package, which is designed for analysis of 2D data or 3D surface irregular data in cylindrical projection. Interface of the package should be convenient for processing of data of gene expression of drosophila fly.
The package is implemented as an R-package.
Latest binary build for Windows could be found here.
It essentially uses the Rssa package. You can also watch Rssa GitHub repository.
Also it uses multidimensional spatial interpolation procedures from our LinearInterpolator
package, which requires the
CGAL library to be installed. For Windows CGAL
compilation is rather complicated, so
it’s better to use precompiled binary.
You can install both LinearInterpolator
and BioSSA
packages from GitHub directly (using Hadley’s package devtools
)
by the following code:
Be careful, devtools
package has some additional dependences.
Decomposition of the image into a sum of pattern and noise is fulfilled by Shaped 2D/3D Singular Spectrum Analysis.
This work is supported by the NG13-083 grant of Dynasty Foundation.
This work is supported by the RFBR grant 16-04-00821.